Arnaud Quelin, Frederic Austerlitz, Flora Jay. Using supervised machine learning methods to infer demographic history from genomic data. Machine Learning for Evolutionary Genomics Data, May 2024, Heraklion, Greece. ⟨hal-05570974⟩
Arnaud Quelin, Jazeps Medina Tretmanis, Emilia Huerta-Sanchez, Frederic Austerlitz, Flora Jay. Assessing the contribution of ancient genomic data to the inference of historical demographic parameters. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. ⟨hal-05570966⟩
Jean Cury, Théophile Sanchez, Erik Madison Bray, Jazeps Medina-Tretmanis, María Ávila-Arcos, et al.. Inferring effective population sizes of bacterial populations while accounting for unknown recombination and selection: a deep learning approach. ECML PKDD 2022 - Machine Learning for Microbial Genomics workshop, Sep 2022, Grenoble, France. ⟨hal-05554282⟩
George Marchment, Sarah Cohen-Boulakia, Frédéric Lemoine. Computational Reproducibility With Scientific Workflows: Analysing viral genomes with Nextflow. ACM REP'25 ACM Conference on Reproducibility and Replicability, Jul 2025, Vancouver, Canada. ⟨hal-05525260⟩
Marie Schmit, Ulysse Le Clanche, George Marchment, Sarah Cohen-Boulakia, Olivier Dameron, et al.. ShareFAIR-KG. 2025, ⟨swh:1:rev:a96c28345857df13aafbc85461df2ab0cf259ef8;origin=https://gitlab.liris.cnrs.fr/sharefair/knowledge_base_workflow_annotations/ShareFAIR-KG.git;visit=swh:1:snp:e53f57ef45e971e1b9b76477d1f39f4fbe3de77f⟩. ⟨hal-05517690⟩
Louis Ollivier, Gilles Fischer, Fanny Pouyet. A Robust Computational Framework to Characterize the Genetic Diversity Across 3,570 Strains in S. cerevisiae. JOBIM 2025, Jul 2025, Bordeaux, France. ⟨hal-05484804⟩
Louis Ollivier, Gilles Fischer, Fanny Pouyet. A Robust Computational Framework to Characterize the Genetic Diversity Across 3,570 Strains in Saccharomyces cerevisiae. Yeast 2025, Jul 2025, Paris, France. ⟨hal-05484807⟩
Antoine Szatkownik. Modélisation générative dans un espace latent et évaluation de données synthétiques en génomique des populations. Informatique [cs]. Université Paris-Saclay, 2025. Français. ⟨NNT : 2025UPASG109⟩. ⟨tel-05475569v2⟩
Burak Yelmen, Merve Nur Güler, Tõnu Kollo, Märt Möls, Guillaume Charpiat, et al.. Bias in genome-wide association test statistics due to omitted interactions. RECOMB 2026 - 30th Annual International Conference on Research in Computational Molecular Biology, May 2026, Thessaloniki, Greece. ⟨10.1101/2025.11.21.689603⟩. ⟨hal-05474710⟩