Article dans une revue
Bio-informatique
Affichage des résultats 1 à 12 sur 88 au total
Bio-informatique : 1 à 12 sur 88 au total
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Communication dans un congrès
Marie Schmit, Melvin Selim Atay, Khalid Belhajjame, Ulysse Le Clanche, Emmanuel Coquery, et al.. ShareFAIR-KG, a centralised knowledge base of scientific workflows. JOBIM 2026 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2026, Strasbourg, France. ⟨hal-05666980⟩
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Logiciel
George Marchment, Sarah Cohen-Boulakia, Frédéric Lemoine, Bryan Brancotte. BioFlow-Insight. 2026, ⟨swh:1:dir:9cbc8a04afc7b791fb5796f9b286ddb1f0f7af01;origin=https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight;visit=swh:1:snp:0073ce5b2737e3fa95b37406b1436f2fd7e9f369;anchor=swh:1:rev:e6005d56f5bb93c7cf63248d43451fd07abb71aa⟩. ⟨pasteur-05650681⟩
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Chapitre d'ouvrage
Sarah Cohen-Boulakia, Frédéric Lemoine, George Marchment, Marine Djaffardjy, Alban Gaignard, et al.. Reuse and reproduce bioinformatic pipelines using scientific workflow systems. Berlin Universities Publishing. Workflow systems for large-scale scientific data analysis, Berlin Universities Publishing, 2026, 978-3-98781-067-1. ⟨10.14279/depositonce-25828⟩. ⟨pasteur-05640482⟩
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Chapitre d'ouvrage
Sarah Cohen-Boulakia, George Marchment, Thomas Cokelaer, Frédéric Lemoine. Reprohackathons: training efforts to increase bioinformatics reproducibility using scientific workflow systems. Ulf Leser, Marcus Hilbrich, Sean R. Wilkinson, Rafael Ferreira da Silva. Workflow systems for large-scale scientific data analysis, Berlin Universities Publishing, pp.547-564, 2026, 978-3-98781-067-1 (print) ; 978-3-98781-068-8 (online). ⟨10.14279/depositonce-25835⟩. ⟨pasteur-05640478⟩
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Communication dans un congrès
George Marchment, Sarah Cohen-Boulakia, Frédéric Lemoine. Computational Reproducibility With Scientific Workflows: Analysing viral genomes with Nextflow. REP'25 ACM Conference on Reproducibility and Replicability, Jul 2025, Vancouver, Canada. ⟨hal-05525260⟩
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Communication dans un congrès
Estelle Chaix, Bertrand Dubreucq, Dialekti Valsamou, Abdelhak Fatihi, Robert Bossy, et al.. Information extraction challenge Gene Regulation Network in Arabidopsis thaliana (GRNA). Paris-Saclay Center for Data Science: Open Software Initiative (OSI), Oct 2015, Orsay, France. pp.14 slides, ⟨10.13140/RG.2.1.4286.6326⟩. ⟨hal-01603453⟩
Année de publication
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Logiciel
Marie Schmit, Ulysse Le Clanche, George Marchment, Sarah Cohen-Boulakia, Olivier Dameron, et al.. ShareFAIR-KG. 2025, ⟨swh:1:rev:a96c28345857df13aafbc85461df2ab0cf259ef8;origin=https://gitlab.liris.cnrs.fr/sharefair/knowledge_base_workflow_annotations/ShareFAIR-KG.git;visit=swh:1:snp:e53f57ef45e971e1b9b76477d1f39f4fbe3de77f⟩. ⟨hal-05517690⟩
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Communication dans un congrès
Marie Schmit, Ulysse Le Clanche, George Marchment, Sarah Cohen-Boulakia, Olivier Dameron, et al.. A Standards-Based Knowledge Graph that Bridges Scientific Workflows, Run-Time Provenance, and Tool Registries. SWAT4HCLS 2026, Mar 2026, Amsterdam, Netherlands. ⟨hal-05517640⟩
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Poster de conférence
Louis Ollivier, Gilles Fischer, Fanny Pouyet. A Robust Computational Framework to Characterize the Genetic Diversity Across 3,570 Strains in S. cerevisiae. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. ⟨hal-05484804⟩
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Poster de conférence
Louis Ollivier, Gilles Fischer, Fanny Pouyet. A Robust Computational Framework to Characterize the Genetic Diversity Across 3,570 Strains in Saccharomyces cerevisiae. Yeast 2025, Jul 2025, Paris, France. ⟨hal-05484807⟩
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Article dans une revue
Clément Bernard, Guillaume Postic, Sahar Ghannay, Fariza Tahi. RNAdvisor 2: A unified platform for RNA 3D model quality assessment using metrics, scoring functions, and meta-metrics. Scientific Reports, 2025, 15 (1), pp.41487. ⟨10.1038/s41598-025-23326-y⟩. ⟨hal-05452894⟩